{ "_id": "6a1041e5acfb0bcc41c9d9a3", "Package": "brea", "Version": "0.4.2", "Date": "2025-08-30", "Title": "Bayesian Recurrent Events Analysis", "Description": "Functions to produce MCMC samples for posterior inference\nin semiparametric Bayesian discrete time competing risks\nrecurrent events models and multistate models.", "Authors@R": "person(given = c(\"Adam\", \"J\"),\nfamily = \"King\",\nrole = c(\"aut\", \"cre\"),\nemail = \"king@cpp.edu\")", "Maintainer": "Adam J King ", "License": "GPL-3", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-11 07:32:33 UTC", "User": "root" }, "Author": "Adam J King [aut, cre]", "Repository": "https://adam-king.r-universe.dev", "Date/Publication": "2025-08-30 16:20:02 UTC", "RemoteUrl": "https://github.com/cran/brea", "RemoteRef": "HEAD", "RemoteSha": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "MD5sum": "1ab5a5251344b7be9a3131e71f671501", "_user": "adam-king", "_type": "src", "_file": "brea_0.4.2.tar.gz", "_fileid": "56a385d2ef1e0dc9f7a002fdda520e1db1412f099ae49aadd8717f2b6413efcb", "_filesize": 437642, "_sha256": "56a385d2ef1e0dc9f7a002fdda520e1db1412f099ae49aadd8717f2b6413efcb", "_created": "2026-05-11T07:32:33.000Z", "_published": "2026-05-22T11:45:41.249Z", "_distro": "noble", "_jobs": [ { "job": 77373041755, "time": 115, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6912718387" }, { "job": 77373041885, "time": 117, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6912718619" }, { "job": 77373041845, "time": 183, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6912728718" }, { "job": 77373041814, "time": 211, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6912728636" }, { "job": 77373040953, "time": 198, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6912682150" }, { "job": 77373041075, "time": 91, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7159699333" }, { "job": 77373041862, "time": 77, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6912706573" }, { "job": 77373041773, "time": 120, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6912720543" }, { "job": 77373041848, "time": 68, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6912703970" } ], "_buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/brea", "_commit": { "id": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "author": "Adam J King ", "committer": "cran-robot ", "message": "version 0.4.2\n", "time": 1756570802 }, "_maintainer": { "name": "Adam J King", "email": "king@cpp.edu", "login": "adam-king", "uuid": 13820659 }, "_registered": true, "_dependencies": [ { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "survival", "role": "Suggests" }, { "package": "coda", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 1 }, { "week": "2025-35", "n": 1 } ], "_tags": [ { "name": "0.4.1", "date": "2025-07-26" }, { "name": "0.4.2", "date": "2025-08-30" } ], "_stars": 0, "_contributors": [ { "user": "adam-king", "count": 6, "uuid": 13820659 } ], "_userbio": { "uuid": 13820659, "type": "user", "name": "Adam King" }, "_downloads": { "count": 246, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/brea" }, "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/brea.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "adam-king", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2016-10-07" }, { "version": "0.2.0", "date": "2017-10-09" }, { "version": "0.3.0", "date": "2024-07-02" }, { "version": "0.3.1", "date": "2024-07-22" }, { "version": "0.4.1", "date": "2025-08-01" }, { "version": "0.4.2", "date": "2025-08-30" } ], "_exports": [ "brea_mcmc", "brea_mcmc_ms" ], "_help": [ { "page": "brea_mcmc", "title": "Bayesian Discrete Survival Inference", "topics": [ "brea_mcmc" ] }, { "page": "brea_mcmc_ms", "title": "Bayesian Discrete Multistate Inference", "topics": [ "brea_mcmc_ms" ] } ], "_rundeps": [], "_vignettes": [ { "source": "brea.Rmd", "filename": "brea.html", "title": "Introduction to brea", "author": "Adam King", "engine": "knitr::rmarkdown", "headings": [ "Background", "Discrete Time Survival Analysis", "Hazard Rates and Cox Proportional Hazards Models", "Expanding Data to Person-Time Format", "Formatting Data for the brea Package", "Bayesian Inference via MCMC Simulation", "Prior and Posterior Distributions", "Inference via MCMC Sampling from the Posterior Distribution", "Detailed Example of a Simple Cox Model", "Classical Partial Likelihood Inference using coxph()", "Discrete Time Survival Data Preparation", "Frequentist Logistic Regression Inference using glm()", "Polynomial Time Effect", "Step Function Time Effect", "Bayesian Inference using brea_mcmc()", "Setting Up an MCMC Run", "Extracting and Examining Results", "Assessing MCMC Performance and Adjusting MCMC Run Length S", "Better Step Function Approximation using the GMRF Prior Type", "Inferences", "Comparison with Other Approaches", "References" ], "created": "2024-07-23 02:45:03", "modified": "2025-08-30 16:20:02", "commits": 3 }, { "source": "brea_gmrf.Rmd", "filename": "brea_gmrf.html", "title": "Semiparametric Covariate Effects in the brea Package", "author": "Adam King", "engine": "knitr::rmarkdown", "headings": [ "Background", "Modeling Nonlinear Covariate Effects in the Discrete Cox Model", "The Discrete Time Cox Proportional Hazards Model", "Additive Modeling of Nonlinear Covariate Effects", "Modeling Nonlinear Effects Using Step Functions", "Bayesian Smoothing of Step Heights Using GMRF's", "Metropolis-Hastings Inference for Parameters with GMRF Priors", "Example Implementation of a Smooth Baseline Hazard in a Cox Model", "Data Setup", "Model Fitting", "Posterior Inference", "Comparing Different Step Widths", "MCMC Performance Assessment and Comparison", "References" ], "created": "2025-08-30 16:20:02", "modified": "2025-08-30 16:20:02", "commits": 1 } ], "_score": 2.6020599913279625, "_indexed": true, "_nocasepkg": "brea", "_universes": [ "adam-king" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.4.2", "date": "2026-05-11T07:34:27.000Z", "distro": "noble", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "32928b58e4ea78a1be1add5b53a99ce2bafda6a0d05827b88d90fd6c6c929e72", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" }, { "r": "4.6.0", "os": "linux", "version": "0.4.2", "date": "2026-05-11T07:34:28.000Z", "distro": "noble", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "f5fd47d485086c9fb86e37760b3d97b7dfd45c1821b24ecb7b31f6e0ed5d131c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" }, { "r": "4.5.3", "os": "mac", "version": "0.4.2", "date": "2026-05-11T07:35:06.000Z", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "ce3bc16c9c12b2671eb0c15d2beb6b299cd0dc0abd7d24aa5f482e350b221869", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" }, { "r": "4.6.0", "os": "mac", "version": "0.4.2", "date": "2026-05-11T07:35:02.000Z", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "1ea3f512622167ce507977730af167f333fcff3bb2dc32c54c4e8522d69a9e20", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" }, { "r": "4.7.0", "os": "win", "version": "0.4.2", "date": "2026-05-11T07:33:46.000Z", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "43e6e3d73341d370954aaf78055ba40fde3077610d519d8831168d43d3aa7ded", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" }, { "r": "4.5.3", "os": "win", "version": "0.4.2", "date": "2026-05-11T07:34:31.000Z", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "e19a16cff943cf0677ddf8cfec6b2a46c2dbeb9d0228af3a11cd2c0505caa4eb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" }, { "r": "4.6.0", "os": "win", "version": "0.4.2", "date": "2026-05-11T07:33:39.000Z", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "4b3226122afda6d9365f2b37fcc2be00ccf40302ee6cee020718f76d1c68b1ac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" }, { "r": "4.6.0", "os": "wasm", "version": "0.4.2", "date": "2026-05-22T11:45:22.000Z", "commit": "fdee3d1284fe66313828d0d2869f5cd04cf57408", "fileid": "e14ac1d2bb99740c2358e8c9c4aa02d0ee3ef47899648952aef00ab8e2cb30bb", "status": "success", "buildurl": "https://github.com/r-universe/adam-king/actions/runs/25656454813" } ] }